PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G283600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 424aa    MW: 47105.1 Da    PI: 8.2184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G283600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11267312454
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        +h ++Er+RR+++++ f+eLr +lP+ +       ++K++ Le Av YI++L
  Aqcoe4G283600.1.p 267 NHVIAERQRREKLKHLFNELRAVLPNvS------GMDKSTLLEAAVCYINKL 312
                        799***********************55......69*************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-3823175IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.189263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13264328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-12266317No hitNo description
PfamPF000102.6E-8267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-13267326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTISSSLTPR SSSSPGQEAL STLQDRLQFF VQNRPEQWAY TIFWRKENDA SVVLAWGNGH  60
FKGTKVLVGV QRKTLLEGDG SLDYLTDAEW FYMLSLTQSF AIGDNLIGKV YSTGNSTWLN  120
GIQDLLEYGE RAKEAKLHGI QTLVCIPTSS GVLELGSSEF IKENLGLLQQ AKTLFGSEVA  180
TLVSKQPNPG TSFPFLDPIN IAFADGIPVG EHEKKEQQHE AEIQMEVAMN GLSSSLVSEH  240
SYFVEKRQMP KKKGRKPGNG REYVPVNHVI AERQRREKLK HLFNELRAVL PNVSGMDKST  300
LLEAAVCYIN KLKANIQAAQ MSSKKIEIEK LLNGRCNSDS KGLVMMEVEV RIHGPDAMIR  360
MQCKNMNHPS ARLMGALRDL EFQVLHMTVC SVEELMIQNV LASLPKGLGT EERVKAALIS  420
RLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24221758192Transcription factor MYC3
4rqw_B2e-24221758192Transcription factor MYC3
4rs9_A2e-24221758192Transcription factor MYC3
4yz6_A2e-24221758192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.11e-119Basic helix-loop-helix DNA-binding family protein
TrEMBLA0A061DS371e-119A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGPOPTR_0002s17750.11e-118(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-56bHLH family protein